IGVFFI1748LUPP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5447SESV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G4_P021_L001_R3

md5sum

22b7abc39701b852cd419820c48e4988

Content MD5sum

b7792b363e84c9abe71900d9209b1547

File Size

6.8 GB

Submitted File Name

Multiome_ATAC_X021_G4_L004_P021_S2_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

204481631

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7224INWP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples