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IGVFFI1739UALI

released
validated
File Set
IGVFDS5111SPGA(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp2_rna_10x1_NGS1_r1
md5sum
fc17cfbe88e03bf066a7248fc34c3160
Content MD5sum
1cd52ce278c8a9332fe33b1a20bfa635
File Size
6.6 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF2_McGinnis/GEX/FASTQ/GEX_3_S43_L007_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
350449102

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
184 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1739UALI, IGVFFI7077BGII, IGVFFI7144UAPA, IGVFFI1931ACCE
Ansuman Satpathy, Stanford
1.4 KB
validated