IGVFFI1733QCHO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9863NLYD(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X013_G6_P011_L003_R2

md5sum

75096e9f788e689ff3fa6de8587a94a3

Content MD5sum

f9af7e15626be4e90d927fc86f56a40c

File Size

3.5 GB

Submitted File Name

Multiome_ATAC_X013_G6_L006_P011_S24_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

198420070

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5754ELBV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples