IGVFFI1731GAWF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7782SATY(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G4_P053_L001_I1

md5sum

4dd9ecf068f9ef25c203950cef0ce7a5

Content MD5sum

dd7955abbe8eac8fe6e5f66fa0dc714c

File Size

622 MB

Submitted File Name

Multiome_ATAC_RP004_G4_L004_P053_S12_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

80699073

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5502KZTB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples