IGVFFI1725KFSA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0455TEQC(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X046_G2_P048_L004_R1

md5sum

13288f414dab65f6f54fc5a7bbe9017d

Content MD5sum

5ddc150ccce53adbb97d14643f6a9e0e

File Size

4.9 GB

Submitted File Name

Multiome_RNA_X046_G2_L002_P048_S14_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

240097175

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7324LMEY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples