IGVFFI1715SKRI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8701BRPU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G8_P057_L001_I1

md5sum

a16a088b12599b0d97e76aedd3ca2812

Content MD5sum

1c7ccde3461c0696a1dfb7a80c597e66

File Size

306 MB

Submitted File Name

Multiome_ATAC_RP008_G8_L008_P057_S8_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

40937875

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9455XPMQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples