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INDEXED
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IGVFFI1713PZKF
IGVFFI1713PZKF
released
validated
Json view
File Set
IGVFDS7359TFTN
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x2_NGS1_i1
md5sum
8c9493d07028a72206f6e1a7ac734f41
Content MD5sum
cbe18463f8f7764862d15e1e7b58028b
File Size
1.1 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC2_S21_L007_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
172036203
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5189FTFS
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2013BVRU
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.5 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2020LNIP
yaml
seqspec
seqspec of IGVFFI1675JYIK, IGVFFI5791ZCZX, IGVFFI1713PZKF, IGVFFI1858ZMBL
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford