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INDEXED
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SequenceFile
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IGVFFI1699UNLW
IGVFFI1699UNLW
released
validated
Json view
File Set
IGVFDS0059HMSM
(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 2359
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2359_R2
buenrostro-bernstein:SS-LS_2359_R2
md5sum
19affea9fad666333cece5870903fc90
Content MD5sum
561b003c2c8256732570f1865b775586
File Size
711 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-27_L2_SS-PKR-3_SS-V1-2nd-THIRD_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2359
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
15824940
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7081AOVO
PrimaryCell
bone marrow
Homo sapiens (female, 19 years) bone marrow cell (cellular sub pool: SS-PKR 3)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4279WJVY
tsv
fragments
GRCh38 fragments
Jason Buenrostro, Broad
13 GB
validated