IGVFFI1699SDDV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1897GFNY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G4_P065_L006_R1

md5sum

2688bdd3972c9a19d80d242da062b7a0

Content MD5sum

95c8e67c1ac3a054b33d0b3ba1858b30

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X050_G4_L004_P065_S34_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58322340

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7568QAEB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples