IGVFFI1689JXFK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6459RETS(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G2_P031_L001_R1

md5sum

a43b33ac35b453e2c06096ff054bd336

Content MD5sum

0cf67c7c0114510a0e5f33c1429df023

File Size

13 GB

Submitted File Name

Multiome_ATAC_X031_G2_L002_P031_S8_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

244906988

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3376RRIH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples