IGVFFI1682CFMQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1306ZCOQ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G6_P025_L001_R3

md5sum

fb45e48d9e523ab7b2ec49c892ec0bb9

Content MD5sum

56bd314d8a2467401221d27782c19e1e

File Size

46 GB

Submitted File Name

Multiome_ATAC_X026_G6_L006_P025_S7_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

1464626239

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5730MFMA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples