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IGVFFI1681PMGU
IGVFFI1681PMGU
preview
validated
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6874YIXA
(prime editing Variant-EFFECTS)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:Jurkat_Stim-IL2RA_prom-NegControl-PCRRep1_R1
md5sum
92ab2af5134444750a687cefbce9df8d
Content MD5sum
06af3b083bce6b9080671477a0d8ba70
File Size
6.8 KB
Submitted File Name
Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-PCRRep1-BinNeg_S193_R1_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Illumina Read Type
R1
Index
CGTTACCA:CCTG
Average Read Length
150
Read Count
47
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7816WZNZ
InVitroSystem
Jurkat
Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9903UNGI
tsv
variant effects
variant effects
Jesse Engreitz, Stanford
5.9 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford