IGVFFI1681BASZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4859WSNO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G8_P069_L002_R1

md5sum

ca84d7cd3addab1b77e23b2cd9338a39

Content MD5sum

f69191c5d34966618e7f033e88a77b70

File Size

9.2 GB

Submitted File Name

Multiome_ATAC_X051_G8_L008_P069_S16_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

134580940

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5596NTCY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples