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IGVFFI1677MAQO

released
validated
File Set
IGVFDS6911ZLIV(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 176
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_176_R1
buenrostro-bernstein:SS-LS_176_R1
md5sum
9429f216dd26ef1fc7b89b923830d626
Content MD5sum
9000c559307f4472c174e612eae84f57
File Size
10 GB
Submitted File Name
gs://fc-7b87fd5f-6af3-4823-befa-ac5875469fa1/BMMC_single_donor_RNA_L001_R1.fastq.gz
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
176
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
511250744

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 212), Homo sapiens

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
639 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1677MAQO, IGVFFI6627SHNX
Jason Buenrostro, Broad
1.2 KB
validated

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad