Home

IGVFFI1675FJSG

released
validated
File Set
IGVFDS8563NWFI(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp15_atac_10x3_NGS2_r1
md5sum
bbc03bc9fdfa8623853cefb67d703c46
Content MD5sum
23dd99ea165bd25d17dd9c1d71e12b4e
File Size
12 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/ATAC/CMAS17_ATAC3_S5_L003_R1_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NHMTLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
405244457

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.7 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1675FJSG, IGVFFI4016UEUB, IGVFFI9788ZSQG, IGVFFI9365VAKL
Ansuman Satpathy, Stanford
1.4 KB
validated