IGVFFI1673KOUC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0549PHUZ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G2_P053_L004_R3

md5sum

3e59af6b6356d39a6302655d36773be3

Content MD5sum

e58f7fb6ae43b0dd970b26c2b1f20f70

File Size

2.6 GB

Submitted File Name

Multiome_ATAC_RP004_G2_L002_P053_S10_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

85469625

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9557IMSU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples