IGVFFI1652WTKY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3164XQLE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X045_G1_P046_L002_R1

md5sum

be166d2d4962a039c2750f41e7369829

Content MD5sum

14b2ef2034fec9077e0705164208420f

File Size

6.0 GB

Submitted File Name

Multiome_RNA_X045_G1_L001_P046_S5_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

299204607

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2472IWEH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples