IGVFFI1652WMQF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4396WXHV(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G8_P017_L001_R2

md5sum

684d4c46e29dc037dd19c1959d7b652f

Content MD5sum

41fa2d3ae619630c82ce4b231daca0b9

File Size

5.4 GB

Submitted File Name

Multiome_ATAC_X017_G8_L008_P017_S2_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

321179584

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5591WTFR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples