IGVFFI1645HCTB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6783ZBOV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G8_P057_L003_R3

md5sum

571e402ba738d527358cd0adbd86376f

Content MD5sum

a04aa6326f5750da92b8b331f4afd420

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_RP009_G8_L008_P057_S16_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

45442721

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9488DNCQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples