IGVFFI1641ICFG

released
validated
File Set
IGVFDS2372JFBI(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinF-PCR2_Rep2_S177
md5sum
5ff3c1b53230078116877e85539824b1
Content MD5sum
3f2f7d1751e75567344cb3f2649de5d1
File Size
26 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinF-PCR2-Rep2_S177_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
TTCGCTGA:GCCA
Average Read Length
21
Read Count
1334998

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1641ICFG
Jesse Engreitz, Stanford
910 B
validated

Attribution