IGVFFI1634TICD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6907QXIG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G8_P065_L005_R1

md5sum

adc6283eb8f37e9d6f54bb1ed9f31185

Content MD5sum

f99cf8b1db05ddcf67510c18091a4b58

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X050_G8_L008_P065_S38_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63017866

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8228BJUZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples