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INDEXED
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SequenceFile
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IGVFFI1629VWON
IGVFFI1629VWON
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6107XJBQ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X047_G5_P050_L002_R1
md5sum
2b76219210f42bb1a2cb792d02fb5976
Content MD5sum
9a838d6dc23447a42334801b697b0b43
File Size
13 GB
Submitted File Name
Multiome_RNA_X047_G5_L005_P050_S13_L002_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H7VW3DSX7
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
101
Read Count
201555110
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1695CPQZ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples