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IGVFFI1625RYZQ

released
validated
File Set
IGVFDS9364TNAM(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS05-prim3-ATAC.R1.fastq.gz
md5sum
57c40b8a35a882386a10e5cdec2f9a7a
Content MD5sum
3c452af33ebd83e66bd3e580e14f2411
File Size
3.4 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS05-prim3-ATAC.R1.fastq.gz
Checkfiles Version
v14
Submitter Comment
DSS05-prim-12k-2,DSS05-prim-12k-3_P1.61,DSS05-prim-12k-4_P1.05

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
49.43
Read Count
100518150

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Jason Buenrostro, Broad
4.9 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1625RYZQ, IGVFFI7512KRYI, IGVFFI0602TOGB
Jason Buenrostro, Broad
1.2 KB
validated

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad