IGVFFI1611MQSG

released
validated
File Set
IGVFDS3352ZNFQ(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR2_S169
md5sum
651c63294e078c65801e797249612e86
Content MD5sum
675461abbb2d45b21218e2da756f7e21
File Size
7.3 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/210301B002-CohesinFF/fastq/CCND1-Auxin0hrs-FF1-BinA-PCR2_S169_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
AACAATGG:CATA
Average Read Length
21
Read Count
313603

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1611MQSG
Jesse Engreitz, Stanford
909 B
validated

Attribution