IGVFFI1597PAXC

released

validated

File Set

IGVFDS3352ZNFQ(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR4_S361

md5sum

9e1625adae029a0b3687ff1a5f2137ff

Content MD5sum

3bcb7074a89cfdbbc00dd75ef32a874e

File Size

7.3 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/210301B002-CohesinFF/fastq/CCND1-Auxin0hrs-FF1-BinA-PCR4_S361_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

AACAATGG:TGCG

Average Read Length

Read Count

312353

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM7865RIGH

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library