IGVFFI1587MCOD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0577OKVB(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G1_P075_L005_R1

md5sum

ea2504a325efcca38e0c3f1d2b54e2c8

Content MD5sum

fa736f2092bb8307e26a2c9553a906c9

File Size

13 GB

Submitted File Name

Multiome_ATAC_RP026_G1_L001_P075_S17_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

173213272

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0921NWYJ

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples