IGVFFI1577UVKW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4879QWBP(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X037_G5_P038_L002_R1

md5sum

bb237441db7854478679cb7277921700

Content MD5sum

603d25147ea5983afcc0a7a46fdb10cf

File Size

5.5 GB

Submitted File Name

Multiome_RNA_X037_G5_L005_P038_S11_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

267019671

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9613XGGA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples