IGVFFI1563ESAS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8338UULL(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G6_P013_L001_R2

md5sum

a5d71065e8545b55c8ad7cfc2825650e

Content MD5sum

13405cd614d5e0ea4563312435b47e28

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_X015_G6_L006_P013_S12_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

186570809

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1243ZSOP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples