IGVFFI1560XGGG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8336JFEI(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G1_P059_L007_R3

md5sum

d252a5254cc55460a1197f1a9aa7f823

Content MD5sum

eb920074b2bbc3e3d9f412940ff7717b

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP012_G1_L001_P059_S81_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52774439

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3122KACM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples