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INDEXED
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SequenceFile
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IGVFFI1547QGEW
IGVFFI1547QGEW
released
validated
Json view
File Set
IGVFDS5103JQSX
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x4_NGS1_r2
md5sum
bee27685eb0fdb6bc804829c419ca573
Content MD5sum
a00b3f9735b98e4162248ac17dcfe685
File Size
2.9 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC4_S23_L007_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
179879001
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3762JDVU
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7457JZZA
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.4 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0647QBUO
yaml
seqspec
seqspec of IGVFFI5638QUNK, IGVFFI2766AFBC, IGVFFI1547QGEW, IGVFFI4960BHNR
Ansuman Satpathy, Stanford
1.4 KB
validated