IGVFFI1541AVQS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7440FKID(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X013_G5_P011_L003_R2

md5sum

1480689899ecb9df69589dcfc207d906

Content MD5sum

1504f54133e47819f2867fadc392bb7a

File Size

4.0 GB

Submitted File Name

Multiome_ATAC_X013_G5_L005_P011_S23_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

228261956

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4906REGO

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples