IGVFFI1525RJCJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6532IRJT(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X042_G4_P044_L008_R1

md5sum

76eddf515e3f5894a6d8cd428cae2e59

Content MD5sum

519b093c13d878f849a9610d033ff0da

File Size

1.1 GB

Submitted File Name

Multiome_RNA_X042_G4_L004_P044_S22_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56605187

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6255JGZM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples