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INDEXED
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SequenceFile
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IGVFFI1523IDOK
IGVFFI1523IDOK
released
validated
Json view
File Set
IGVFDS6385JXFZ
(untransfected prime editing Variant-EFFECTS)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-THP1-PE2_Exp3_NegControl-PCRrep1_R1
md5sum
a77be3bfad2c44d013916167dd284bdb
Content MD5sum
73b80c22cc1dd86aa8790c40a8f8305a
File Size
40 MB
Submitted File Name
220228pPPIF-FFSample-1-DNA-pPPIF-Amp-pPPIF-1-1-1-BinNeg_R1_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Illumina Read Type
R1
Index
GCAGCCGT:TGAC
Average Read Length
150
Read Count
1913659
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM2216EFEX
InVitroSystem
THP-1
THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford