IGVFFI1520DVTQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8894MIXR(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X042_G6_P044_L005_I1

md5sum

886424d23ed76afaf909856dfb562d16

Content MD5sum

df7815546f945a3e97aa03a04e1b4c9e

File Size

416 MB

Submitted File Name

Multiome_RNA_X042_G6_L006_P044_S24_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65536727

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1167MABH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples