IGVFFI1515XJZY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9258PMZG(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G5_P071_L007_R2

md5sum

a92bab208c32422b61638c2cbc7daf65

Content MD5sum

64d01b1e4e264171cdd7f41b1a89a616

File Size

3.7 GB

Submitted File Name

Multiome_ATAC_X052_G5_L005_P071_S41_L007_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

216574654

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3735PHFP

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples