IGVFFI1512AZAD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2167DNAB(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G6_P037_L001_R1

md5sum

2b9e116c1e5d33b4969e531861daface

Content MD5sum

2bf5cc998ed39a7583a7ff5a6b7e5c66

File Size

7.2 GB

Submitted File Name

Multiome_ATAC_X037_G6_L006_P037_S12_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

232827775

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6715JWBK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples