IGVFFI1509CMZC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1524WKTN(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X028_G3_P027_L003_R3

md5sum

1a62d4c91380e47f0c33857c9063fb14

Content MD5sum

4a38b023f28d441dbac80dbcb4a33052

File Size

6.1 GB

Submitted File Name

Multiome_ATAC_X028_G3_L003_P027_S20_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

195525738

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7150ADFP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples