{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI1504YIGM/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI1504YIGM",
"aliases": [
"jay-shendure:sc_rep_devCRE_mEBs_oBC_CS1_repA_reseq_10Xlane1_R1"
],
"assay_titles": [
"MPRA (scQer)"
],
"audit": {},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"content_md5sum": "2e205fe2835545f5b6a3883e5e78d3d7",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:58:57.032207+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS7792HFAY/",
"accession": "IGVFDS7792HFAY",
"file_set_type": "circularized RNA barcode detection",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4494VUEQ/",
"accession": "IGVFSM4494VUEQ",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"status": "released",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci"
},
"file_size": 1204018742,
"flowcell_id": "AAANJV7HV",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI1504YIGM/@@download/IGVFFI1504YIGM.fastq.gz",
"illumina_read_type": "R1",
"input_file_for": [
"/tabular-files/IGVFFI2410QRVN/",
"/tabular-files/IGVFFI0929WRXO/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"lane": 1,
"loci_list_for": [],
"maximum_read_length": 28,
"md5sum": "d286b978d8a89bbc806caeb667cb10bf",
"mean_read_length": 28,
"minimum_read_length": 28,
"read_count": 55868549,
"release_timestamp": "2024-06-27T00:41:46.940150+00:00",
"s3_uri": "s3://igvf-files/2023/12/09/17167027-6b2b-4fb0-8e71-ca5d7a756449/IGVFFI1504YIGM.fastq.gz",
"schema_version": "14",
"seqspecs": [
"/configuration-files/IGVFFI0310WDFU/"
],
"sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0010963/",
"status": "released",
"term_name": "Illumina NextSeq 2000"
},
"sequencing_run": 2,
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_oBC_CS1_repA_lane1_reseq_R1_001.fastq.gz",
"summary": "R1 reads from sequencing run 2",
"upload_status": "validated",
"uuid": "17167027-6b2b-4fb0-8e71-ca5d7a756449"
}