IGVFFI1486EQDH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1648GTHD(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X048_G8_P049_L001_R1

md5sum

904964d39a13702ca4e44ad23b41ed51

Content MD5sum

df969f32fb459f7ca72b60412b9e107c

File Size

6.2 GB

Submitted File Name

Multiome_ATAC_X048_G8_L008_P049_S12_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

187688963

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6506JPYW

MultiplexedSample

posterior cingulate gyrus, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 93 years) substantia nigra tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples