IGVFFI1472FMGU

released

validated

File Set

IGVFDS7316VKFT(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_KITLG-Auxin0hrs-FF4-BinB-PCR3_S134

md5sum

ffaf928d5c4a46655da816a3a28b5cde

Content MD5sum

53c0326bd945a6eb65c8b7c5028df30b

File Size

15 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220104B013_Cohesin_KITLG/fastq_trim/Auxin0hrs-FF4-BinB-PCR3_S134_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

CAGCAAGG:ATTG

Average Read Length

Read Count

612172

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM8103DFGV

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library