{
"@context": "/terms/",
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"Item"
],
"accession": "IGVFFI1448JEKK",
"aliases": [
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],
"assay_titles": [
"10x multiome"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "a4f6f7294b6e888ead60f6f1c647ec78",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T16:15:18.192104+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS8279BIFD/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8279BIFD",
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"term_name": "single-nucleus RNA sequencing assay"
},
"controlled_access": false,
"data_use_limitation_summaries": [
"No limitations"
],
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM7661NHYY/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7661NHYY",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"@type": [
"PhenotypeTerm",
"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "mild cognitive impairment",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"@type": [
"PhenotypeTerm",
"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "Parkinson's disease",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "cerebral amyloid angiopathy",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "Alzheimer disease",
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}
],
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"sample_terms": [
{
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"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
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"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002771/",
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}
],
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"summary": "multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples",
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"treatments": []
}
],
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},
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"href": "/sequence-files/IGVFFI1448JEKK/@@download/IGVFFI1448JEKK.fastq.gz",
"illumina_read_type": "I2",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lane": 4,
"loci_list_for": [],
"maximum_read_length": 10,
"md5sum": "81d03a0af34dcdf07f9a5553b903dd23",
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"s3_uri": "s3://igvf-files/2025/03/20/9181bbdd-600b-4a5a-bcea-cc9f0653e97e/IGVFFI1448JEKK.fastq.gz",
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"sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
"sequencing_platform": {
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"term_name": "Illumina NovaSeq X"
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"status": "preview",
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"title": "Ryan Corces"
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"summary": "I2 reads from sequencing run 2",
"upload_status": "validated",
"uuid": "9181bbdd-600b-4a5a-bcea-cc9f0653e97e"
}