IGVFFI1434FBAU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0738WMFX(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G8_P042_L003_I2

md5sum

158b765f00aa182e98cb592aabcc911f

Content MD5sum

e1ace09d5b897b6062b984a932b52437

File Size

380 MB

Submitted File Name

Multiome_RNA_X041_G8_L008_P042_S18_L003_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56638126

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3938LXBP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples