IGVFFI1422PURC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0512GCRI(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X013_G2_P011_L003_R2

md5sum

9df17d8b3444f81d59078f3c19873e67

Content MD5sum

096c535566cfda722f9f80216cd28231

File Size

3.8 GB

Submitted File Name

Multiome_ATAC_X013_G2_L002_P011_S20_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

213659537

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6042BRFE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples