IGVFFI1401IKHX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4249DVHL(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G2_P057_L003_R3

md5sum

864d6a3c4dd4758e8e2c7ea31b701c2f

Content MD5sum

ef315b3ba26b8b1cd7cd8252a6a1c8fb

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_RP010_G2_L002_P057_S18_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

46043098

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8981GXZB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples