IGVFFI1394TGQS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2954XAKI(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G3_P069_L002_I1

md5sum

052e9c879b09b3a4be12a309d59bdb57

Content MD5sum

f8e0960774a16d7c5c36e3ae4553744e

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_X052_G3_L003_P069_S19_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

160755492

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6674PZBO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples