IGVFFI1391FFUK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8611TPMB(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 2

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP011_G6_P074_L004_R1

md5sum

5cd5dba6d267fcebb5c39cc016115e35

Content MD5sum

8628a5d98965d365891bbf4d861f5c04

File Size

15 GB

Submitted File Name

Multiome_RNA_RP011_G6_L014_P074_S40_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19UBCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

171254905

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6926MVZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples