IGVFFI1389MJNK

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI1389MJNK/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI1389MJNK",
    "aliases": [
        "bradley-bernstein:SS-LS_2239_R2",
        "buenrostro-bernstein:SS-LS_2239_R2"
    ],
    "assay_titles": [
        "SHARE-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping"
    },
    "content_md5sum": "e5d0b439d88598cdaba6cc5b3a6e69e1",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-02-12T21:27:36.615455+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS3237WAED/",
        "accession": "IGVFDS3237WAED",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/primary-cells/IGVFSM3423JQWQ/",
                "accession": "IGVFSM3423JQWQ",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0002371/",
                        "status": "released",
                        "term_name": "bone marrow"
                    }
                ],
                "status": "released",
                "summary": "bone marrow cell (cellular sub pool: SS-PKR 1), female, Homo sapiens (19 years)",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "single-cell ATAC-seq (SHARE-seq)"
    },
    "file_size": 1947950942,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI1389MJNK/@@download/IGVFFI1389MJNK.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/tabular-files/IGVFFI4279WJVY/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jason-buenrostro/",
        "title": "Jason Buenrostro, Broad"
    },
    "loci_list_for": [],
    "maximum_read_length": 149,
    "md5sum": "76e177fb9fad5afd50c75de2e04eae6b",
    "mean_read_length": 149,
    "minimum_read_length": 149,
    "read_count": 37195410,
    "release_timestamp": "2025-01-14T19:10:05.396256+00:00",
    "s3_uri": "s3://igvf-files/2024/02/12/e0ecf8d1-7164-4839-a57f-a76d09ab4d4d/IGVFFI1389MJNK.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 2239,
    "status": "released",
    "submitted_by": {
        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
        "title": "Siddarth Wekhande"
    },
    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-3_L1_SS-PKR-1_SS-V1-2nd-THIRD_R2.fastq.gz",
    "submitter_comment": "This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.",
    "summary": "R2 reads from sequencing run 2239",
    "upload_status": "validated",
    "uuid": "e0ecf8d1-7164-4839-a57f-a76d09ab4d4d"
}