IGVFFI1388LXDX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1652TDRC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G8_P055_L003_R1

md5sum

04fe0a6b6ec1003bbb5007707cd27b57

Content MD5sum

9516854582038c49645b47126122bb72

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP007_G8_L008_P055_S20_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52076642

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0124BONK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples