IGVFFI1367BSSS

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI1367BSSS/",
4    "@type": [
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6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1367BSSS",
10    "aliases": [
11        "maya-kasowski:Scale_scRNA_L7_2"
12    ],
13    "assay_titles": [
14        "scRNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "19de43700240f1e8357b6e24a4e3eede",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-07T19:55:08.625909+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS2205WNED/",
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33            "Item"
34        ],
35        "accession": "IGVFDS2205WNED",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM4500AYVD/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM4500AYVD",
50                "classifications": [
51                    "primary cell",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0002371/",
59                        "status": "released",
60                        "term_name": "bone marrow"
61                    }
62                ],
63                "status": "preview",
64                "summary": "multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 21 more samples",
65                "taxa": "Homo sapiens",
66                "treatments": []
67            }
68        ],
69        "status": "preview",
70        "summary": "scRNA-seq"
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74    "href": "/sequence-files/IGVFFI1367BSSS/@@download/IGVFFI1367BSSS.fastq.gz",
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77    "integrated_in": [],
78    "lab": {
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80        "title": "Maya Kasowski, Stanford"
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82    "lane": 7,
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84    "maximum_read_length": 150,
85    "md5sum": "3e9b41ebcef641d666813b580fb080e5",
86    "mean_read_length": 150,
87    "minimum_read_length": 150,
88    "quality_metrics": [],
89    "read_count": 848320692,
90    "read_names": [
91        "Read 2"
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93    "s3_uri": "s3://igvf-restricted-files/2025/03/07/61a722d8-dfd8-4409-8291-b1caa763c2da/IGVFFI1367BSSS.fastq.gz",
94    "schema_version": "15",
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96    "sequencing_kit": "NovaSeq X Series 25B Reagent Kit",
97    "sequencing_platform": {
98        "@id": "/platform-terms/EFO_0022841/",
99        "status": "released",
100        "term_name": "Illumina NovaSeq X Plus"
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102    "sequencing_run": 1,
103    "status": "preview",
104    "submitted_by": {
105        "@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
106        "title": "Shouvik Mani"
107    },
108    "submitted_file_name": "/users/shouvikm/data/Scale/SCALE_RNA/Scale_RNA_96/usftp21.novogene.com/01.RawData/Scale_RNA_96/Scale_RNA_96_CKDL230018055-1A_225KM5LT3_L7_2.fq.gz",
109    "summary": "R2 reads from sequencing run 1",
110    "upload_status": "validated",
111    "uuid": "61a722d8-dfd8-4409-8291-b1caa763c2da"
112}