IGVFFI1363ZBKB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5532ZXNF(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X010_G4_P007_L003_R3

md5sum

1bcae02d2eccb549320063ac54a6d129

Content MD5sum

6d907914f093d96a51f5419c5307ec5e

File Size

11 GB

Submitted File Name

Multiome_ATAC_X010_G4_L004_P007_S32_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

208157061

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9228FDFE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples